Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| paraquat-inducible protein a | FD721_01370 | Not Available | Positive | 263303 - 264496 | 44613.6 |
| mce family protein | FD721_01375 | Not Available | Positive | 264480 - 267104 | 95280.1 |
| hypothetical protein | FD721_01380 | Not Available | Negative | 267188 - 269770 | 97554.2 |
| type vi secretion system lipoprotein tssj | FD721_01385 | Not Available | Positive | 269981 - 270352 | 14257.9 |
| type vi secretion system baseplate subunit tssk | FD721_01390 | Not Available | Positive | 270352 - 271686 | 50220.7 |
| dotu family type iv/vi secretion system protein | FD721_01395 | Not Available | Positive | 271692 - 272492 | 30480.3 |
| type vi secretion system atpase tssh | FD721_01400 | Not Available | Positive | 272502 - 275108 | 96743.7 |
| sigma-54-dependent fis family transcriptional regulator | FD721_01405 | Not Available | Positive | 275114 - 276616 | 57025.3 |
| type vi secretion system-associated protein tago | FD721_01410 | Not Available | Positive | 276622 - 277284 | 24283.5 |
| type vi secretion system protein tssa | FD721_01415 | Not Available | Positive | 277294 - 278742 | 53993.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
