Escherichia coli K-12

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli K-12 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which corresponds to the normal physiological temperature of warm-blooded hosts. As a facultative anaerobe, E. coli K-12 is capable of growth in both aerobic and anaerobic conditions, allowing it to adapt to varying environments within its host-associated habitat. E. coli K-12 is widely used as a model organism in microbiology and genetics due to its well-characterized genome and ease of cultivation. Its ability to survive and proliferate in diverse conditions makes it an invaluable tool for studying cellular processes and gene expression. The strain's adaptability may also reflect its evolutionary success and the complex interactions it has with its host environment. Interestingly, the facultative anaerobic nature of E. coli K-12 enables it to play a role in the microbial community of the gut, where it can switch between utilizing oxygen and fermentative metabolism, thereby influencing the overall dynamics of gut microbiota. This versatility not only sheds light on the bacterium's ecological role but also underscores its significance in understanding microbial interactions and community structure within host-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli K-12
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli K-12

Accession NumberSSTU00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4548 genes

Non-Coding Genes

448 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Zinc-containing alcohol dehydrogenase superfamily proteinFAZ85_01460Not Available+289849 - 29086836508.1
mhs family mfs transporterFAZ85_01465Not Available+290926 - 2910364038.87
Putative integraseFAZ85_01470Not Available-291056 - 29233648359.3
Bacteriophage excisionaseFAZ85_01475Not Available-292371 - 2926079183.07
EndodeoxyribonucleaseFAZ85_01480Not Available-292695 - 29516692814.6
duf1482 family proteinFAZ85_01485Not Available-295260 - 2954516761.27
cell division inhibition protein dicbFAZ85_01490Not Available-295448 - 2956366964.7
hypothetical proteinFAZ85_01495Not Available+295720 - 2959629253.92
Replication proteinFAZ85_01500Not Available+295943 - 29690836952.0
LygfFAZ85_01505Not Available+296949 - 29737116369.8

Displaying genes 1 – 10 of 29723 in total

Pathways

12367 pathways

Metabolites

1427 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1427 metabolites