Tatumella ptyseos

Gram-negativeFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Tatumella

Description

Tatumella ptyseos is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, is classified as a chemoheterotroph, and is categorized as a facultative anaerobe. This microbe is primarily associated with the human gastrointestinal tract but can also be found in various body sites across different species.As a gram-negative organism, Tatumella ptyseos possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, contributing to its ability to elude certain types of antibiotics and resist phagocytosis by immune cells. Its rod-like shape facilitates motility, aiding its colonization and persistence within host environments. The mesophilic temperature preference indicates that it thrives in moderate temperature ranges, typically between 20°C and 45°C, making it well-suited for colonization in warm-blooded hosts. Being a chemoheterotroph, Tatumella ptyseos derives its energy and carbon from organic compounds, which are often sourced from the host's nutrients, further emphasizing its role as a commensal organism in the gastrointestinal microbiota. Its classification as a facultative anaerobe allows it to survive in both aerobic and anaerobic conditions, adapting its metabolic pathways based on the availability of oxygen. Emerging research has revealed the potential of Tatumella ptyseos in clinical contexts, particularly regarding its role in human health and disease. It has been implicated in cases of opportunistic infections, highlighting the delicate balance of microbial life within the gut and its impact on overall health. Furthermore, this microbe’s ability to produce unique metabolic by-products has piqued interest for its possible applications in biotechnology and fermentation processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusTatumella
SpeciesTatumella ptyseos
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tatumella ptyseos

Accession NumberNZ_LS483499.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3201 genes

Non-Coding Genes

238 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Bifunctional nmn adenylyltransferase/nudix hydrolaseDQM83_RS06810Not Available-1402079 - 140253716956.1
23s rrna pseudouridine(2457) synthase rlueDQM83_RS06815Not Available-1402597 - 140321123075.0
nadp-dependent isocitrate dehydrogenaseDQM83_RS06820Not Available+1403558 - 140480745714.5
AttlNot AvailableNot Available+1404823 - 1404849Not Available
IntegraseDQM83_RS06825Not Available-1404916 - 140604242451.9
excisionaseDQM83_RS06830Not Available-1406023 - 14062689433.44
Hypothetical proteinDQM83_RS06835Not Available-1406271 - 140654010264.1
Hypothetical proteinDQM83_RS06840Not Available-1406540 - 140716923580.2
hypothetical proteinDQM83_RS18510Not Available+1407717 - 14079659073.01
Hypothetical proteinDQM83_RS06845Not Available+1407972 - 140869126842.1

Displaying genes 1 – 10 of 3439 in total

Pathways

13 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

313 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002026acrylateC3H3O2Chemical structure of acrylate10344-93-1
Average71.056Da
Monoisotopic71.013852917Da
BASm0002143menaquinone-7C46H64O2Chemical structure of menaquinone-7Not available
Average648.9992Da
Monoisotopic648.4906313Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 313 metabolites