Kocuria rhizophila str. RF

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria rhizophila strain RF is a Gram-positive coccus that typically exists in various arrangements, including singles and tetrads. This microbe is classified as an aerobe, indicating its reliance on oxygen for metabolic processes. Its habitat is diverse, suggesting a level of ecological versatility that may allow it to thrive in multiple environments, potentially including soil, water, and plant-associated niches. The coccoid shape and aerobic nature of K. rhizophila str. RF may contribute to its survival strategies in oxygen-rich environments, which are commonly found in terrestrial ecosystems. Such adaptations could facilitate its role in nutrient cycling and interactions with other microorganisms in its habitat. The ability to exist in multiple arrangements, from solitary cells to pairs or clusters, might also enhance its resilience and adaptability to varying environmental conditions. Overall, Kocuria rhizophila str. RF exemplifies the ecological adaptability of certain Gram-positive cocci, highlighting the potential for diverse metabolic pathways and interactions in various habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria rhizophila
StrainRF

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Kocuria rhizophila str. RF
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Solanum lycopersicum
Cell arrangementSingles - Tetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria rhizophila strain RF contig90, whole genome shotgun

Gene Summary

Adenine Count

411175 bp

Thymine Count

406265 bp

Guanine Count

983976 bp

Cytosine Count

977090 bp

Genome Length

2778506 bp

Protein-coding Genes

2058 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinIX41_01610Not AvailableNegative44911 - 4590336262.2
restriction endonuclease subunit mIX41_01615Not AvailablePositive46207 - 4818073821.5
dead/deah box helicaseIX41_01620Not AvailablePositive49476 - 52676117952.0
hypothetical proteinIX41_01625Not AvailablePositive52922 - 5321810831.4
trap abc transporter substrate-binding proteinIX41_01630Not AvailablePositive53525 - 5473343908.9
c4-dicarboxylate abc transporterIX41_01635Not AvailablePositive54730 - 5691975508.9
enoyl-coa hydrataseIX41_01640Not AvailablePositive57092 - 5792229236.0
3-hydroxyacyl-coa dehydrogenaseIX41_01645Not AvailablePositive57919 - 5879431833.8
lysr family transcriptional regulatorIX41_01650Not AvailableNegative58801 - 5972432877.5
carnitine dehydrataseIX41_01655Not AvailablePositive59847 - 6106142714.4

Displaying genes 41 – 50 of 2058 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.