Kocuria palustris str. CD07_3

Gram-positiveAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria palustris str. CD07_3 is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. As a member of the genus Kocuria, this strain exhibits the typical morphological and physiological traits associated with Gram-positive bacteria, including a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. The aerobic nature of K. palustris str. CD07_3 indicates its reliance on oxygen for metabolism, which may suggest a role in biogeochemical cycles where oxygen is present. This metabolic requirement could enable the strain to participate in the degradation of organic materials in oxygenated environments, potentially influencing nutrient cycling and microbial community dynamics in its habitat. Furthermore, the presence of Kocuria species in various environments, including soil and water, points to their adaptability and ecological significance. While specific ecological interactions and the broader impact of K. palustris str. CD07_3 on its environment remain to be explored, its aerobic metabolism suggests it may play a role in maintaining the balance of microbial communities in habitats where oxygen levels fluctuate, thus contributing to ecosystem resilience.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria palustris
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria palustris str. CD07_3

Accession NumberLQBJ00000000.1

Gene Summary

Adenine Count

417034 bp

Thymine Count

421300 bp

Guanine Count

998127 bp

Cytosine Count

996945 bp

Genome Length

2833425 bp

Protein-coding Genes

2365 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycogen branching proteinAVL60_11760Q47SE7-462 - 4385142685.0
trehalose synthaseAVL60_11765A0R6E0-4433 - 619967183.7
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferaseAVL60_11770Q9L1K2-6305 - 832375712.6
glycogen phosphorylaseAVL60_11775P9WMW0+8593 - 1117895185.7
glycogen debranching enzymeAVL60_11780Not Available-11231 - 1345381005.0
rna methyltransferaseAVL60_11785Q1B2P4-13446 - 1444435744.6
cysteine--trna ligaseAVL60_11790B2GFS8-14553 - 1599552768.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseAVL60_11795B8HCR6-16006 - 1651817397.4
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseAVL60_11800B2HJ23-16521 - 1732428519.1
card family transcriptional regulatorAVL60_11805P9WJG2-17336 - 1781817984.6

Displaying genes 1 – 10 of 2416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

489 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001767oxalateC2O4Chemical structure of oxalateNot available
Average88.019Da
Monoisotopic87.979658488Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001785(2R,3R)-tartrateC4H6O6Chemical structure of (2R,3R)-tartrate87-69-4
Average150.0868Da
Monoisotopic150.0164379Da
BASm0001787(2R,3S)-tartrateC4H4O6Chemical structure of (2R,3S)-tartrateNot available
Average148.071Da
Monoisotopic148.001885Da

Displaying 31–40 of 489 metabolites