Thermococcus kodakarensis KOD1

Gram-negativeCocciMotileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus kodakaraensis strain KOD1. This organism was originally identified as Pyrococcus sp. strain KOD1. It was isolated from a solfatara on Kodakara Island, Japan. A gene disruption system has been developed for this organism. A thermostabile DNA polymerase is commercially available that was originally isolated from this organism and research is continuing to develop commercial applications for other heat-stable enzymes from this organism (NCBI BioProject: bp_list[1])

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus kodakarensis
StrainKOD1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thermococcus kodakarensis KOD1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature85
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Thermococcus kodakarensis KOD1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2304 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
secondary thiamine-phosphate synthase enzyme yjbqTK_RS00060Not AvailablePositive10385 - 1080716124.7
era-like gtp-binding proteinTK_RS00065Not AvailableNegative10808 - 1136521013.1
hypothetical proteinTK_RS00070Not AvailablePositive11415 - 1172611639.1
hd domain-containing proteinTK_RS00075Not AvailablePositive11729 - 1228621252.6
tungstate abc transporter substrate-binding protein wtpaTK_RS00080Not AvailablePositive12347 - 1341139619.5
type ii toxin-antitoxin system vapc family toxinTK_RS00085Not AvailableNegative13392 - 1380815766.3
abrb/maze/spovt family dna-binding domain-containing proteinTK_RS00090Not AvailableNegative13808 - 140238526.38
tungstate abc transporter permease wtpbTK_RS00095Not AvailablePositive14153 - 1489626841.6
aaa family atpaseTK_RS00100Not AvailablePositive14945 - 1596438048.3
duf3226 domain-containing proteinTK_RS00105Not AvailablePositive15968 - 1669927410.4

Displaying genes 11 – 20 of 2357 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

61 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001988(R)-mevalonateC6H11O4Chemical structure of (R)-mevalonateNot available
Average147.1491Da
Monoisotopic147.0657338Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da

Displaying 1–10 of 61 metabolites

Health Effects

No health effects information available for this bacterium.