Xanthomonas oryzae pv. oryzae str. IX-280

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae str. IX-280 is a Gram-negative, rod-shaped bacterium that is primarily associated with host environments, indicating a specific relationship with its plant hosts. As an aerobic organism, it requires oxygen for its metabolic processes, which aligns with the typical characteristics of many bacteria within the Xanthomonadaceae family. The habitat of Xanthomonas oryzae pv. oryzae str. IX-280 suggests its role in specific plant interactions, likely contributing to its ecological niche within agricultural systems. This strain, like other members of its species, may exhibit adaptations that facilitate its survival and proliferation in host-associated environments, potentially influencing the health and yield of crops, particularly in rice cultivation. Understanding the traits of Xanthomonas oryzae pv. oryzae str. IX-280 can provide insights into its ecological interactions and the dynamics of plant-microbe relationships. Further research into its metabolic pathways and interactions with host plants could elucidate its role in the ecosystem, as well as its potential implications for sustainable agriculture practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainpv. oryzae IX-280

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae str. IX-280
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae strain IX-280 plasmid pXOO43,

Gene Summary

Adenine Count

8610 bp

Thymine Count

8497 bp

Guanine Count

12736 bp

Cytosine Count

13132 bp

Genome Length

42975 bp

Protein-coding Genes

53 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ccgaii proteinBCR61_RS24620Not AvailablePositive510 - 81811520.1
hypothetical proteinBCR61_RS24625Not AvailablePositive921 - 11488869.19
hypothetical proteinBCR61_RS24630Not AvailableNegative1760 - 208011553.6
hypothetical proteinBCR61_RS24635Not AvailableNegative2295 - 25439225.12
hypothetical proteinBCR61_RS24645Not AvailableNegative3236 - 358912045.4
stbb family proteinBCR61_RS24650Not AvailableNegative3638 - 434526297.3
hypothetical proteinBCR61_RS24655Not AvailableNegative4342 - 478816573.9
hypothetical proteinBCR61_RS24660Not AvailablePositive5138 - 553314648.4
tn3 family transposaseBCR61_RS25280Not AvailablePositive5533 - 57066406.0
type iv secretion system dna-binding domain-containing proteinBCR61_RS24665Not AvailablePositive5710 - 728458096.7

Displaying genes 1 – 10 of 53 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial blight of riceCausesPMC8042644
Bacterial blight (bb) of riceCausesPMC10265122
Bacterial blight of riceCausesPMC2432079
KresekCausesPMC2432079
Bacterial blightCausesPMC6304360

Displaying health effects 1 – 5 of 5 in total