Xanthomonas oryzae pv. oryzae str. IX-280

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae str. IX-280 is a Gram-negative, rod-shaped bacterium that is primarily associated with host environments, indicating a specific relationship with its plant hosts. As an aerobic organism, it requires oxygen for its metabolic processes, which aligns with the typical characteristics of many bacteria within the Xanthomonadaceae family. The habitat of Xanthomonas oryzae pv. oryzae str. IX-280 suggests its role in specific plant interactions, likely contributing to its ecological niche within agricultural systems. This strain, like other members of its species, may exhibit adaptations that facilitate its survival and proliferation in host-associated environments, potentially influencing the health and yield of crops, particularly in rice cultivation. Understanding the traits of Xanthomonas oryzae pv. oryzae str. IX-280 can provide insights into its ecological interactions and the dynamics of plant-microbe relationships. Further research into its metabolic pathways and interactions with host plants could elucidate its role in the ecosystem, as well as its potential implications for sustainable agriculture practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae str. IX-280
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae str. IX-280

Accession NumberNZ_CP019227.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

53 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ccgaii proteinBCR61_RS24620Not Available+510 - 81811520.1
hypothetical proteinBCR61_RS24625Not Available+921 - 11488869.19
hypothetical proteinBCR61_RS24630Not Available-1760 - 208011553.6
hypothetical proteinBCR61_RS24635Not Available-2295 - 25439225.12
hypothetical proteinBCR61_RS24645Not Available-3236 - 358912045.4
stbb family proteinBCR61_RS24650Not Available-3638 - 434526297.3
hypothetical proteinBCR61_RS24655Not Available-4342 - 478816573.9
hypothetical proteinBCR61_RS24660Not Available+5138 - 553314648.4
tn3 family transposaseBCR61_RS25280Not Available+5533 - 57066406.0
type iv secretion system dna-binding domain-containing proteinBCR61_RS24665Not Available+5710 - 728458096.7

Displaying genes 1 – 10 of 53 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites