Burkholderia pyrrocinia str. DSM 10685

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia pyrrocinia
StrainDSM 10685

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatpetrol contaminated soil
Biotic relationshipNot Available
Host(s)Hordeum vulgare
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia pyrrocinia strain DSM 10685 chromosome 1, complete

Gene Summary

Adenine Count

596688 bp

Thymine Count

593996 bp

Guanine Count

1198737 bp

Cytosine Count

1194682 bp

Genome Length

3584103 bp

Protein-coding Genes

3250 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide chain release factor 2ABD05_RS35495B4EDB1Positive107400 - 10850441039.0
lysine--trna ligaseABD05_RS00505B4EDB2Positive108588 - 11011457500.6
glycine zipper 2tm domain-containing proteinABD05_RS00510Not AvailablePositive110463 - 11120324934.2
fe-s cluster assembly protein iscxABD05_RS00515Q51384Negative111326 - 1115358132.25
isc system 2fe-2s type ferredoxinABD05_RS00520Q51383Negative111553 - 11189412406.5
fe-s protein assembly chaperone hscaABD05_RS00525B1JV00Negative111986 - 11385466083.2
fe-s protein assembly co-chaperone hscbABD05_RS00530B4EDS4Negative113909 - 11443619619.3
iron-sulfur cluster assembly protein iscaABD05_RS00535P44672Negative114531 - 11485411768.0
fe-s cluster assembly scaffold iscuABD05_RS00540P0ACD6Negative114920 - 11532714344.0
iscs subfamily cysteine desulfuraseABD05_RS00545Q1H361Negative115396 - 11661945315.2

Displaying genes 101 – 110 of 7183 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

212 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 212 metabolites

Health Effects

No health effects information available for this bacterium.