Salmonella enterica subsp. enterica serovar Agona

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella enterica subsp. enterica serovar Agona is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the ability to arrange in chains or as singles. This serovar thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting an adaptation to life in a host-associated habitat. As a chemoorganotroph, S. Agona derives its energy from organic compounds, further indicating its reliance on a nutrient-rich environment often found within animal hosts. The microaerophilic nature of S. Agona implies that it requires reduced levels of oxygen for growth, which may influence its distribution and survival strategies within host environments. This trait may also affect its metabolic pathways and interactions with the host's immune system. Additionally, the cell arrangement of S. Agona, as singles or in chains, could play a role in its colonization abilities and biofilm formation in specific niches within the host. Understanding the ecological role of S. enterica serovar Agona enhances our comprehension of its potential interactions within host-associated environments, including implications for nutrient cycling and microbial community dynamics. Moreover, the adaptation to microaerophilic conditions may provide insights into its survival strategies and the ecological pressures it faces within its preferred habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica
Strainsubsp. enterica serovar Agona

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Salmonella enterica subsp. enterica serovar Agona
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Gene Summary

Adenine Count

1143018 bp

Thymine Count

1138203 bp

Guanine Count

1239822 bp

Cytosine Count

1242859 bp

Genome Length

4763902 bp

Protein-coding Genes

4377 genes

Non-Coding Genes

228 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1214412 - 1214425Not Available
Protease iiCYL27_RS05865Not AvailablePositive1229265 - 123131678950.9
Exodeoxyribonuclease xCYL27_RS05870Not AvailableNegative1231351 - 123204926393.0
carbon-nitrogen hydrolase family proteinCYL27_RS05875Not AvailableNegative1232073 - 123272923859.6
Putative dna polymeraseCYL27_RS05880Not AvailableNegative1232837 - 12330678775.66
copc domain-containing protein yobaCYL27_RS05885Not AvailablePositive1233205 - 123357913321.9
copper homeostasis membrane protein copdCYL27_RS05890Not AvailablePositive1233580 - 123445532508.2
Hypothetical proteinCYL27_RS05895Not AvailablePositive1234472 - 123482512729.6
IntegraseCYL27_RS05900Not AvailableNegative1235208 - 123555512802.4
Prophage virulence determinantCYL27_RS05910Not AvailablePositive1235823 - 123824387536.8

Displaying genes 1 – 10 of 37203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da

Displaying 1–10 of 19 metabolites

Health Effects

No health effects information available for this bacterium.