Syntrophus aciditrophicus SB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophia

Order

Syntrophales

Family

Syntrophaceae

Genus

Syntrophus

Description

The syntrophic benzoate degrader Syntrophus aciditrophicus (strain SB) is a new, strictly anaerobic, Gram-negative, nonmotile, non-sporeforming, rod-shaped bacterium that degrades benzoate and certain fatty acids (saturated and unsaturated) to acetate, carbon dioxide, hydrogen, and possibly formate in syntrophic association, or not, with hydrogen/formate-using methanogen microorganisms or a sulfate reducer. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophia
OrderSyntrophales
FamilySyntrophaceae
GenusSyntrophus
SpeciesSyntrophus aciditrophicus
StrainSB

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Syntrophus aciditrophicus SB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophus aciditrophicus SB, complete sequence.

Gene Summary

Adenine Count

772747 bp

Thymine Count

770484 bp

Guanine Count

823297 bp

Cytosine Count

812772 bp

Genome Length

3179300 bp

Protein-coding Genes

2866 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i restriction-modification system subunit m n-terminal domain-containing proteinSYN_RS00165Not AvailableNegative36116 - 3692229342.9
duf1156 domain-containing proteinSYN_RS00170Not AvailableNegative36873 - 3719012280.8
hypothetical proteinSYN_RS00175Not AvailableNegative37190 - 3885162546.5
protein-export chaperone secbSYN_RS14870Not AvailableNegative39018 - 3946417118.6
type ii toxin-antitoxin system mqsa family antitoxinSYN_RS00185Not AvailableNegative39454 - 3998119501.5
type ii toxin-antitoxin system mqsr family toxinSYN_RS00190Not AvailableNegative39983 - 4032413366.9
helicase-related proteinSYN_RS00195Not AvailableNegative40382 - 43963135812.0
hypothetical proteinSYN_RS16140Not AvailableNegative44138 - 442935537.32
hpf/raia family ribosome-associated proteinSYN_RS00200Not AvailablePositive44429 - 4495920363.3
morn repeat-containing proteinSYN_RS14875Not AvailableNegative45133 - 4606534560.2

Displaying genes 81 – 90 of 2955 in total

Metabolites

1697 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1697 metabolites

Health Effects

No health effects information available for this bacterium.