Syntrophus aciditrophicus SB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophia

Order

Syntrophales

Family

Syntrophaceae

Genus

Syntrophus

Description

The syntrophic benzoate degrader Syntrophus aciditrophicus (strain SB) is a new, strictly anaerobic, Gram-negative, nonmotile, non-sporeforming, rod-shaped bacterium that degrades benzoate and certain fatty acids (saturated and unsaturated) to acetate, carbon dioxide, hydrogen, and possibly formate in syntrophic association, or not, with hydrogen/formate-using methanogen microorganisms or a sulfate reducer. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Thermodesulfobacteriota
Class	Syntrophia
Order	Syntrophales
Family	Syntrophaceae
Genus	Syntrophus
Species	Syntrophus aciditrophicus
Strain	SB

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	35
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Syntrophus aciditrophicus SB, complete sequence.

NC_007759.1

Gene Summary

Adenine Count

772747 bp

Thymine Count

770484 bp

Guanine Count

823297 bp

Cytosine Count

812772 bp

Genome Length

3179300 bp

Protein-coding Genes

2866 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
dna-methyltransferase	SYN_RS00055	Not Available	Positive	12576 - 13454	34357.5
pmeii family type ii restriction endonuclease	SYN_RS00060	Not Available	Positive	13414 - 14166	28289.7
hypothetical protein	SYN_RS00070	Not Available	Positive	14822 - 15532	26434.9
peptidylprolyl isomerase	SYN_RS00075	Not Available	Negative	15647 - 16162	19164.8
zf-hc2 domain-containing protein	SYN_RS00080	Not Available	Negative	16357 - 17508	43055.5
rna polymerase sigma factor	SYN_RS00085	Not Available	Negative	17505 - 18152	24281.2
vit domain-containing protein	SYN_RS00090	Not Available	Negative	18355 - 20712	86350.3
alpha/beta hydrolase	SYN_RS00100	Not Available	Positive	21049 - 21930	32637.5
gntr family transcriptional regulator	SYN_RS00105	Not Available	Negative	22064 - 22765	26936.8
succinate--coa ligase subunit beta	SYN_RS00110	Not Available	Positive	22960 - 24102	41286.4

Displaying genes 61 – 70 of 2955 in total

Pathways

1303 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Palmitate Biosynthesis

Fatty Acid Elongation (Saturated)

Show All 1303 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000251	2-dehydropantoateC6H9O4	Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000428	3-oxoadipateC6H6O5	Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000553	biphenyl-2,3-diolC12H10O2	Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O	Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da

Displaying 1–10 of 1697 metabolites

Health Effects

No health effects information available for this bacterium.