Sphingobium chungbukense str. DJ77

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium chungbukense
StrainDJ77

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium chungbukense strain DJ77 contig00040, whole genome

Gene Summary

Adenine Count

1017034 bp

Thymine Count

1006513 bp

Guanine Count

1734084 bp

Cytosine Count

1758864 bp

Genome Length

5516495 bp

Protein-coding Genes

4975 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integral membrane protein yggt, involved in response to extracytoplasmic stress (osmotic shock)YP76_01470Q8U530Negative301812 - 30210210859.1
acetylglutamate kinaseYP76_01475A5VAE6Negative302248 - 30316531837.8
membrane proteinYP76_01480Not AvailableNegative303191 - 30386223457.6
microcin c7 resistance protein mccfYP76_01485Q9ZBI5Negative303943 - 30492934826.1
transcriptional regulatorYP76_01490Not AvailableNegative304971 - 30541416029.7
succinyl-diaminopimelate desuccinylaseYP76_01495Q2GAU5Positive305500 - 30664240280.3
response regulator pledYP76_01500Q9I310Negative306639 - 30831860604.0
dna mismatch repair protein mutsYP76_01505Not AvailableNegative308415 - 30894818973.0
mltaYP76_01510Not AvailableNegative308961 - 31022043487.9
preprotein translocase subunit tim44YP76_01515Not AvailableNegative310217 - 31087323771.3

Displaying genes 291 – 300 of 5039 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

366 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000368(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diolC7H10O2Chemical structure of (1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diolNot available
Average126.155Da
Monoisotopic126.068079562Da

Displaying 1–10 of 366 metabolites

Health Effects

No health effects information available for this bacterium.