Phytopseudomonas straminea

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Phytopseudomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPhytopseudomonas
SpeciesPhytopseudomonas straminea
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatJapanese rice paddies; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos, Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas straminea strain JCM 2783 genome assembly, contig:

Gene Summary

Adenine Count

926646 bp

Thymine Count

909157 bp

Guanine Count

1564495 bp

Cytosine Count

1591705 bp

Genome Length

4992198 bp

Protein-coding Genes

4529 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Pcra helicaseSAMN05216372_105419Not AvailableNegative3267712 - 326963769913.5
cupin domain proteinSAMN05216372_1011Not AvailablePositive1 - 38413890.3
5s ribosomal rna . bacterial tsuNot AvailableNot AvailablePositive129 - 24418.01
16s ribosomal rna . bacterial ssuNot AvailableNot AvailablePositive228 - 176718.01
dipeptide transport system substrate-binding proteinSAMN05216372_1012Not AvailablePositive556 - 215159100.9
23s ribosomal rna . bacterial lsuNot AvailableNot AvailablePositive2279 - 517418.01
dipeptide transport system substrate-binding proteinSAMN05216372_1013Not AvailablePositive2344 - 393958982.0
dipeptide transport system permease proteinSAMN05216372_1014Not AvailablePositive4009 - 501937051.4
hypothetical proteinSAMN05216372_1015Not AvailablePositive5034 - 51895856.92
dipeptide transport system permease proteinSAMN05216372_1016Not AvailablePositive5186 - 609432356.7

Displaying genes 61 – 70 of 4631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00031792-hydroxy-4-oxobutane-1,2,4-tricarboxylateC7H5O8Chemical structure of 2-hydroxy-4-oxobutane-1,2,4-tricarboxylateNot available
Average217.111Da
Monoisotopic217.0000879Da
BASm00033374-hydroxy-4-methyl-2-oxoglutarateC6H6O6Chemical structure of 4-hydroxy-4-methyl-2-oxoglutarateNot available
Average174.109Da
Monoisotopic174.0175351Da
BASm0004232(4R)-4-hydroxy-2-oxoglutarateC5H4O6Chemical structure of (4R)-4-hydroxy-2-oxoglutarateNot available
Average160.082Da
Monoisotopic160.001885009Da
BASm0005091(4S)-4-hydroxy-2-oxoglutarateC5H4O6Chemical structure of (4S)-4-hydroxy-2-oxoglutarateNot available
Average160.082Da
Monoisotopic160.001885009Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.