Parabacteroides merdae

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae is a Gram-negative, rod-shaped bacterium that thrives in a moderate temperature range, between 22°C and 37°C, categorizing it as a mesophilic microbe. This bacterium is a heterotroph, meaning it derives its energy from the breakdown of organic compounds, specifically glucose and other carbohydrates. It is also a chemoheterotroph, as it uses chemical reactions to convert its energy source into ATP. As a chemoheterotroph, P. merdae produces its energy through the process of cellular respiration, specifically aerobic respiration. This means it requires oxygen to produce energy, classifying it as an obligate aerobe. This microbe is found in various body sites across all species, including the gastrointestinal tract, skin, and respiratory tract, where it plays a crucial role in the breakdown of complex nutrients. P. merdae is known to form biofilms, complex communities of microorganisms attached to surfaces, which enable it to colonize and adapt to its environment. Its ability to form biofilms also allows it to survive in the face of antimicrobial therapy and antibiotics. In addition to its significance in the human body, P. merdae has been found to be involved in various diseases, including inflammatory bowel disease, diarrhea, and even cancer. Its role in these diseases is complex and multifaceted, and further research is needed to fully understand its contribution. Studies have also shown that P. merdae produces adhesins, molecules that allow it to attach to host cells, and has been found to induce inflammation and modulate the immune response. Its ability to interact with the host immune system makes it an important target for future research and potential therapeutic applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AF33-34 AF33-34.Scaf71, whole genome

Gene Summary

Adenine Count

1260656 bp

Thymine Count

1270019 bp

Guanine Count

1053244 bp

Cytosine Count

1051121 bp

Genome Length

4635236 bp

Protein-coding Genes

3753 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system hicb family antitoxinDWZ59_01380Not AvailableNegative285376 - 28578015327.3
Hypothetical proteinDWZ59_01385Not AvailableNegative285839 - 2860247107.65
hypothetical proteinDWZ59_01390Not AvailableNegative286142 - 28655816360.0
Putative single strand dna-binding proteinDWZ59_01395Not AvailableNegative286655 - 28705915298.3
hypothetical proteinDWZ59_01400Not AvailableNegative287056 - 28733410394.9
Yopx-like proteinDWZ59_01405Not AvailableNegative287331 - 28780718618.1
2_nc_021798: dna methylaseDWZ59_01410Not AvailableNegative287810 - 28944760893.0
hypothetical proteinDWZ59_01415Not AvailableNegative289534 - 2897769008.28
hypothetical proteinDWZ59_01420Not AvailableNegative289790 - 29034721838.4
Dna replication proteinDWZ59_01425Not AvailableNegative290304 - 29119134343.6

Displaying genes 21 – 30 of 22316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total