Agathobacter rectalis

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis is a Gram-positive, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is classified as an anaerobe. This microbe thrives optimally at a temperature of 37.0°C, suggesting an adaptation to warm environments, potentially aligning with the physiological conditions found within the mammalian gut. Notably, Agathobacter rectalis is nonsporulating, indicating that it does not form spores as a means of survival under adverse conditions. The bacterium's chemoheterotrophic nature allows it to utilize organic compounds as both a carbon and energy source, which is typical for many anaerobic bacteria inhabiting diverse environments. Its ability to thrive in multiple habitats underscores its ecological versatility, though the specifics of these habitats remain broad and varied. The presence of Agathobacter rectalis in anaerobic environments, particularly within the gastrointestinal tract, may play a role in the complex microbial communities that contribute to gut health and functionality. This suggests a potential involvement in metabolic processes or interactions that could influence the host's digestive efficiency and overall well-being. Further research could elucidate the specific contributions of Agathobacter rectalis to these microbiomes and its interactions with other microbial species in various ecological contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Gene Summary

Adenine Count

866774 bp

Thymine Count

854171 bp

Guanine Count

617615 bp

Cytosine Count

606812 bp

Genome Length

2945641 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

11

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
holliday junction resolvase recuDXD95_00385Not AvailablePositive81648 - 8218120554.6
Ncrna_class:otherNot AvailableNot AvailablePositive82070 - 82253Not Available
atp phosphoribosyltransferase regulatory subunitDXD95_00390Not AvailablePositive82254 - 8344444907.4
atp phosphoribosyltransferaseDXD95_00395Not AvailablePositive83448 - 8409524238.7
histidinol dehydrogenaseDXD95_00400Not AvailablePositive84138 - 8542747142.2
imidazoleglycerol-phosphate dehydratase hisbDXD95_00405Not AvailablePositive85443 - 8603321613.9
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieDXD95_00410Not AvailablePositive86035 - 8731848352.0
tigr03960 family b12-binding radical sam proteinDXD95_00415Not AvailablePositive87353 - 8921571553.9
duf2344 domain-containing proteinDXD95_00420Not AvailablePositive89205 - 8992427309.0
ribonuclease e/gDXD95_00425Not AvailablePositive89924 - 9113245271.7

Displaying genes 81 – 90 of 34465 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0004099L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioateC15H25N4O8Chemical structure of L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioateNot available
Average389.386Da
Monoisotopic389.167787361Da
BASm0004102dATPC10H12N5O12P3Chemical structure of dATP1927-31-7
Average487.152Da
Monoisotopic486.97172616Da
BASm0004165L-ascorbate 6-phosphateC6H6O9PChemical structure of L-ascorbate 6-phosphateNot available
Average253.08Da
Monoisotopic252.976589511Da
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.