Agathobacter rectalis

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis is a Gram-positive, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is classified as an anaerobe. This microbe thrives optimally at a temperature of 37.0°C, suggesting an adaptation to warm environments, potentially aligning with the physiological conditions found within the mammalian gut. Notably, Agathobacter rectalis is nonsporulating, indicating that it does not form spores as a means of survival under adverse conditions. The bacterium's chemoheterotrophic nature allows it to utilize organic compounds as both a carbon and energy source, which is typical for many anaerobic bacteria inhabiting diverse environments. Its ability to thrive in multiple habitats underscores its ecological versatility, though the specifics of these habitats remain broad and varied. The presence of Agathobacter rectalis in anaerobic environments, particularly within the gastrointestinal tract, may play a role in the complex microbial communities that contribute to gut health and functionality. This suggests a potential involvement in metabolic processes or interactions that could influence the host's digestive efficiency and overall well-being. Further research could elucidate the specific contributions of Agathobacter rectalis to these microbiomes and its interactions with other microbial species in various ecological contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Gene Summary

Adenine Count

866774 bp

Thymine Count

854171 bp

Guanine Count

617615 bp

Cytosine Count

606812 bp

Genome Length

2945641 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

11

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate aminotransferase family proteinDXD95_00050Not AvailablePositive14722 - 1593944178.1
comea family dna-binding proteinDXD95_00055Not AvailablePositive15997 - 1670425394.9
dna-binding response regulatorDXD95_00060Not AvailablePositive16715 - 1740726461.0
sensor histidine kinaseDXD95_00065Not AvailablePositive17429 - 1888054179.1
sporulation and spore germinationDXD95_00070Not AvailablePositive18849 - 1983536824.7
dna internalization-related competence protein comec/rec2DXD95_00075Not AvailablePositive19878 - 2224186300.1
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive21228 - 21488Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive21618 - 23191Not Available
dna polymerase iii subunit deltaDXD95_00080Not AvailablePositive22222 - 2323238184.8
30s ribosomal protein s20DXD95_00085Not AvailableNegative23317 - 235959576.72

Displaying genes 11 – 20 of 34465 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0004099L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioateC15H25N4O8Chemical structure of L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioateNot available
Average389.386Da
Monoisotopic389.167787361Da
BASm0004102dATPC10H12N5O12P3Chemical structure of dATP1927-31-7
Average487.152Da
Monoisotopic486.97172616Da
BASm0004165L-ascorbate 6-phosphateC6H6O9PChemical structure of L-ascorbate 6-phosphateNot available
Average253.08Da
Monoisotopic252.976589511Da
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.