Nocardia farcinica str. TRH1

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia farcinica strain TRH1 is a Gram-positive, coccoid bacterium characterized by its filamentous cell arrangement. This microbe is a chemoheterotroph, deriving its energy from organic compounds, and thrives optimally at a temperature of 37.0°C. As an aerobic organism, N. farcinica TRH1 requires oxygen for its metabolic processes, which aligns with its habitat preference for soil environments. The nonsporulating nature of this strain suggests a reliance on vegetative growth under favorable conditions rather than forming spores as a survival strategy. The filamentous arrangement of its cells may contribute to its ability to colonize and interact with soil microenvironments effectively, potentially facilitating its role in nutrient cycling within its ecosystem. Overall, the ecological insight into Nocardia farcinica str. TRH1 highlights its adaptation to soil habitats where it may play a significant role in the decomposition of organic materials, thus influencing soil health and fertility in its native environment.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia farcinica
StrainTRH1

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Nocardia farcinica str. TRH1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Homo sapiens, Bos taurus
Cell arrangementFilaments
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Nocardia farcinica strain TRH1 contig_99, whole genome shotgun

Gene Summary

Adenine Count

836799 bp

Thymine Count

839374 bp

Guanine Count

1772625 bp

Cytosine Count

1781215 bp

Genome Length

5230013 bp

Protein-coding Genes

4323 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrofolate reductaseA8M60_00030Not AvailableNegative5726 - 625319012.4
hnh endonucleaseA8M60_00040Not AvailablePositive7191 - 756513634.3
hypothetical proteinA8M60_00045Not AvailableNegative7566 - 855235750.7
hypothetical proteinA8M60_00050Not AvailablePositive8692 - 961531870.9
na+/h+ antiporter nhaaA8M60_00055Not AvailableNegative9600 - 1092246605.7
hnh endonucleaseA8M60_00060Not AvailableNegative11053 - 1244750920.2
hypothetical proteinA8M60_00065Not AvailablePositive12895 - 1338018202.7
hypothetical proteinA8M60_00070Not AvailablePositive13512 - 137819533.84
flavodoxinA8M60_00075Not AvailableNegative13896 - 1430013991.4
hypothetical proteinA8M60_00080Not AvailableNegative14356 - 1489519733.6

Displaying genes 11 – 20 of 4374 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Disseminated nocardiosisCausesPMC9112502
NocardiosisCausesPMC9850167
Disseminated life-threatening infectionsCausesPMC11994016
Disseminated infectionsCausesPMC11994016
Central nervous system infectionCausesPMC11994016
Brain abscessCausesPMC11994016
Disseminated infectionCausesPMC11994016
Severe pneumoniaCausesPMC11994016
BacteremiaCausesPMC12139244
Localized or disseminated purulent or granulomatous lesionsCausesPMC12419247

Displaying health effects 1 – 10 of 15 in total