Oxobacter pfennigii str. DSM 3222

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Oxobacter

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusOxobacter
SpeciesOxobacter pfennigii
StrainDSM 3222

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oxobacter pfennigii strain DSM 3222 OXPF_contig000069, whole

Gene Summary

Adenine Count

1365495 bp

Thymine Count

1385459 bp

Guanine Count

874481 bp

Cytosine Count

885117 bp

Genome Length

4510552 bp

Protein-coding Genes

4238 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Protein of unknown function duf955OXPF_05940P10426Negative622130 - 62257016798.0
Transcriptional regulator, xre familyOXPF_05950Not AvailableNegative622586 - 62305317243.7
helix-turn-helix proteinOXPF_05960Not AvailablePositive623265 - 6234988667.94
hypothetical proteinOXPF_05970Not AvailablePositive623495 - 62394417995.7
hypothetical proteinOXPF_05980Not AvailablePositive624017 - 6242147613.32
Tail proteinOXPF_05990Not AvailablePositive624654 - 62510017099.8
Hypothetical proteinOXPF_06000Not AvailablePositive625108 - 62553016462.7
hypothetical proteinOXPF_06010Not AvailablePositive625517 - 6256997077.58
Xkdk-like tail sheath proteinOXPF_06020P54331Positive625700 - 62701646479.9
Xkdm-like portal proteinOXPF_06030P54332Positive627018 - 62748217213.5

Displaying genes 1 – 10 of 4351 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

165 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 165 metabolites

Health Effects

No health effects information available for this bacterium.