Riemerella anatipestifer str. RCAD0133

rodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Riemerella

Description

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusRiemerella
SpeciesRiemerella anatipestifer
StrainRCAD0133

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Riemerella anatipestifer strain RCAD0133 chromosome, complete

Gene Summary

Adenine Count

810773 bp

Thymine Count

824028 bp

Guanine Count

433820 bp

Cytosine Count

440519 bp

Genome Length

2509140 bp

Protein-coding Genes

2377 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gydia family ghmp kinaseAWB57_RS07355Not AvailableNegative1471856 - 147275834402.3
patatin-like phospholipase family proteinAWB57_RS07360O34731Positive1472876 - 147504181706.4
rrna maturation rnase ybeyAWB57_RS07365A5FL87Positive1475057 - 147547916511.7
duf6261 family proteinAWB57_RS07370Not AvailableNegative1475581 - 147618322181.8
is982-like element isra1 family transposaseAWB57_RS07375Not AvailableNegative1476463 - 147734134482.9
susc/raga family tonb-linked outer membrane proteinAWB57_RS07380T2KMI3Positive1477498 - 1480443109096.0
ragb/susd family nutrient uptake outer membrane proteinAWB57_RS07385Not AvailablePositive1480464 - 148192754625.5
m20/m25/m40 family metallo-hydrolaseAWB57_RS07390Not AvailableNegative1482008 - 148356158011.0
hypothetical proteinAWB57_RS07395Not AvailablePositive1483932 - 148445319273.1
hypothetical proteinAWB57_RS07400Not AvailablePositive1484619 - 148605853336.0

Displaying genes 1501 – 1510 of 2469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

119 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 119 metabolites

Health Effects

No health effects information available for this bacterium.