Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Rathayibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Rathayibacter |
| Species | Rathayibacter tritici |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | native Korean plants |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Hordeum vulgare |
| Cell arrangement | Pairs; Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
483422 bp
Thymine Count
478505 bp
Guanine Count
1110535 bp
Cytosine Count
1121259 bp
Genome Length
3193866 bp
Protein-coding Genes
2893 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | C5C18_03490 | Not Available | Positive | 743419 - 744738 | 48083.9 |
| duf1727 domain-containing protein | C5C18_03495 | Not Available | Positive | 744743 - 746008 | 44587.4 |
| hypothetical protein | C5C18_03500 | Not Available | Positive | 745567 - 746718 | 41338.5 |
| hypothetical protein | C5C18_03505 | Not Available | Negative | 746771 - 747004 | 8477.79 |
| type iia dna topoisomerase subunit b | C5C18_03510 | Not Available | Positive | 747196 - 749277 | 75460.2 |
| dna topoisomerase iv | C5C18_03515 | Not Available | Negative | 749296 - 751764 | 87738.9 |
| alkaline phosphatase family protein | C5C18_03520 | Not Available | Positive | 751946 - 753061 | 39484.0 |
| duf3071 domain-containing protein | C5C18_03525 | Not Available | Negative | 753089 - 754174 | 39863.8 |
| duf4193 domain-containing protein | C5C18_03530 | Not Available | Positive | 754388 - 754681 | 10536.2 |
| duf3093 domain-containing protein | C5C18_03535 | Not Available | Negative | 754678 - 755151 | 17023.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gumming | Causes | PMC4664631 |
| Spike blight | Causes | PMC5538441 |
| Yellow ear rot | Causes | PMC5538441 |
| Yellow slime rot | Causes | PMC5538441 |
| Tundu disease | Causes | PMC5538441 |
| Gumming disease | Causes | PMC5538441 |
| Spike blight of wheat and barley | Causes | PMC5880354 |