Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor 3 | AO275_25220 | Not Available | Negative | 913878 - 915461 | 59753.4 |
| hypothetical protein | AO275_25225 | Not Available | Positive | 915477 - 915788 | 10702.8 |
| glycine/betaine abc transporter permease | AO275_25230 | Not Available | Positive | 915805 - 916518 | 24880.7 |
| glycine/betaine abc transporter substrate-binding protein | AO275_25235 | Not Available | Positive | 916533 - 917426 | 33170.7 |
| choline abc transporter permease | AO275_25240 | Not Available | Positive | 917440 - 918093 | 22931.4 |
| glycine/betaine abc transporter atp-binding protein | AO275_25245 | Not Available | Positive | 918090 - 919259 | 43482.3 |
| ornithine decarboxylase | AO275_25250 | Not Available | Positive | 919804 - 920967 | 43468.2 |
| hypothetical protein | AO275_25255 | Not Available | Negative | 921006 - 921803 | 29146.8 |
| fe(ii)-dependent oxygenase | AO275_25260 | Not Available | Negative | 921806 - 922486 | 25554.3 |
| ligand-gated channel protein | AO275_25265 | Not Available | Positive | 922701 - 924953 | 81434.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
