Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | AO275_06510 | Not Available | Negative | 816384 - 817397 | 37394.8 |
| gntr family transcriptional regulator | AO275_06515 | Not Available | Negative | 817746 - 818462 | 26477.4 |
| gntr family transcriptional regulator | AO275_06520 | Not Available | Positive | 818571 - 819305 | 26951.4 |
| porin | AO275_06525 | Not Available | Negative | 819508 - 820230 | 28249.9 |
| peptide abc transporter atp-binding protein | AO275_06530 | Not Available | Negative | 820357 - 821121 | 28186.8 |
| peptide abc transporter atp-binding protein | AO275_06535 | Not Available | Negative | 821132 - 821971 | 31277.3 |
| d-ala-d-ala transporter subunit | AO275_06540 | Not Available | Negative | 821992 - 822897 | 32173.0 |
| abc transporter permease | AO275_06545 | Not Available | Negative | 822897 - 823934 | 37592.5 |
| abc transporter substrate-binding protein | AO275_06550 | Not Available | Negative | 823976 - 825598 | 60082.3 |
| mandelate racemase | AO275_06555 | Not Available | Negative | 825690 - 826844 | 42448.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
