Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal abc transporter substrate-binding protein | AO275_05950 | Not Available | Positive | 683452 - 684366 | 31964.5 |
| antibiotic synthesis protein mbth | AO275_05955 | Not Available | Negative | 684485 - 684712 | 8821.48 |
| 2,4-diaminobutyrate 4-aminotransferase | AO275_05960 | Not Available | Negative | 684794 - 686206 | 50571.5 |
| non-ribosomal peptide synthetase | AO275_05965 | Not Available | Negative | 686389 - 699408 | 480990.0 |
| thioesterase | AO275_05970 | Not Available | Negative | 699502 - 700260 | 28146.9 |
| rna polymerase subunit sigma-70 | AO275_05975 | Not Available | Positive | 700583 - 701119 | 20154.4 |
| cag pathogenicity island protein cag5 | AO275_05980 | Not Available | Negative | 701189 - 701716 | 19630.4 |
| histidine kinase | AO275_05985 | Not Available | Positive | 701914 - 703098 | 42982.7 |
| luxr family transcriptional regulator | AO275_05990 | Not Available | Positive | 703095 - 703763 | 23667.6 |
| histidine kinase | AO275_05995 | Not Available | Positive | 703760 - 706087 | 85763.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
