Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylmalonate-semialdehyde dehydrogenase | AO275_18475 | Not Available | Negative | 632307 - 633833 | 54262.2 |
| lysr family transcriptional regulator | AO275_18480 | Not Available | Positive | 633993 - 634964 | 36520.9 |
| hypothetical protein | AO275_18485 | Not Available | Positive | 635252 - 635671 | 16303.7 |
| glyoxalase | AO275_18490 | Not Available | Negative | 635705 - 636091 | 14476.3 |
| 2og-fe(ii) oxygenase | AO275_18495 | Not Available | Negative | 636093 - 637106 | 37710.4 |
| isochorismatase | AO275_18500 | Not Available | Negative | 637333 - 637971 | 23374.0 |
| exodeoxyribonuclease v subunit alpha | AO275_18505 | Not Available | Negative | 638123 - 640216 | 76629.2 |
| exodeoxyribonuclease v subunit beta | AO275_18510 | Not Available | Negative | 640213 - 643905 | 137668.0 |
| exodeoxyribonuclease v subunit gamma | AO275_18515 | Not Available | Negative | 643902 - 647378 | 129906.0 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 647591 - 647706 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
