Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane lipid asymmetry maintenance protein mlad | AO275_17620 | Not Available | Negative | 457295 - 457762 | 16390.9 |
| abc transporter permease | AO275_17625 | Not Available | Negative | 457762 - 458559 | 28364.2 |
| abc transporter atp-binding protein | AO275_17630 | Not Available | Negative | 458559 - 459368 | 29548.0 |
| d-arabinose 5-phosphate isomerase | AO275_17635 | Not Available | Positive | 459694 - 460668 | 34535.0 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | AO275_17640 | Not Available | Positive | 460669 - 461208 | 19377.3 |
| lps export abc transporter periplasmic protein lptc | AO275_17645 | Not Available | Positive | 461218 - 461790 | 21479.6 |
| lipopolysaccharide transport periplasmic protein lpta | AO275_17650 | Not Available | Positive | 461777 - 462325 | 19730.6 |
| abc transporter atp-binding protein | AO275_17655 | Not Available | Positive | 462325 - 463050 | 26511.2 |
| rna polymerase sigma-54 factor | AO275_17660 | Not Available | Positive | 463246 - 464739 | 56729.1 |
| hypothetical protein | AO275_17665 | Not Available | Positive | 464814 - 465122 | 11623.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
