Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit beta | AO275_19255 | Not Available | Negative | 5661219 - 5662322 | 40584.0 |
| chromosomal replication initiation protein | AO275_19260 | Not Available | Negative | 5662361 - 5663896 | 57119.3 |
| 50s ribosomal protein l34 | AO275_19265 | Not Available | Positive | 5664482 - 5664616 | 5124.46 |
| ribonuclease p protein component | AO275_19270 | Not Available | Positive | 5664633 - 5665034 | 15138.5 |
| membrane protein insertion efficiency factor | AO275_19275 | Not Available | Positive | 5665027 - 5665272 | 9176.15 |
| insertase | AO275_19280 | Not Available | Positive | 5665275 - 5666960 | 61777.0 |
| trna modification gtpase mnme | AO275_19285 | Not Available | Positive | 5667039 - 5668409 | 48802.1 |
| trna uridine 5-carboxymethylaminomethyl modification protein | AO275_19290 | Not Available | Positive | 5669076 - 5670968 | 69216.8 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | AO275_19295 | Not Available | Positive | 5670965 - 5671621 | 24299.3 |
| chromosome partitioning protein | AO275_19300 | Not Available | Positive | 5671640 - 5672431 | 28879.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
