Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulp family inorganic anion transporter | AO275_19155 | Not Available | Positive | 5638751 - 5640319 | 56381.0 |
| shikimate dehydrogenase | AO275_19160 | Not Available | Negative | 5640347 - 5641168 | 29094.8 |
| coproporphyrinogen iii oxidase | AO275_19165 | Not Available | Negative | 5641310 - 5642224 | 34658.4 |
| quinone oxidoreductase | AO275_19170 | Not Available | Positive | 5642390 - 5643367 | 34385.3 |
| trna threonylcarbamoyladenosine biosynthesis protein rimn | AO275_19175 | Not Available | Negative | 5643392 - 5643949 | 20604.8 |
| dna processing protein dpra | AO275_19180 | Not Available | Negative | 5643987 - 5645099 | 38816.5 |
| peptidoglycan-binding protein | AO275_19185 | Not Available | Negative | 5645223 - 5646248 | 37614.1 |
| peptide deformylase | AO275_19190 | Not Available | Positive | 5646372 - 5646878 | 19239.2 |
| methionyl-trna formyltransferase | AO275_19195 | Not Available | Positive | 5646938 - 5647882 | 33548.7 |
| 16s rrna methyltransferase | AO275_19200 | Not Available | Positive | 5647879 - 5649189 | 47439.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
