Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome oxidase subunit i | AO275_19005 | Not Available | Negative | 5612059 - 5613651 | 58648.0 |
| cytochrome b559 subunit alpha | AO275_19010 | Not Available | Negative | 5613812 - 5614933 | 41727.2 |
| hypothetical protein | AO275_19015 | Not Available | Positive | 5615286 - 5615936 | 24000.3 |
| sulp family inorganic anion transporter | AO275_19020 | Not Available | Negative | 5616060 - 5617592 | 53101.7 |
| carbonate dehydratase | AO275_19025 | Not Available | Negative | 5617694 - 5618434 | 26752.8 |
| radical sam protein | AO275_19030 | Not Available | Negative | 5618641 - 5619699 | 39229.6 |
| hypothetical protein | AO275_19035 | Not Available | Positive | 5619920 - 5620150 | 8716.49 |
| hypothetical protein | AO275_19040 | Not Available | Positive | 5620216 - 5620548 | 12154.1 |
| dna-binding protein | AO275_19045 | Not Available | Negative | 5620610 - 5620897 | 10398.5 |
| oligopeptidase a | AO275_19050 | Not Available | Negative | 5620894 - 5622945 | 75587.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
