Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal abc transporter permease | AO275_18955 | Not Available | Positive | 5604652 - 5605326 | 24251.6 |
| methionine abc transporter substrate-binding protein | AO275_18960 | Not Available | Positive | 5605380 - 5606153 | 27785.5 |
| copper-binding protein | AO275_18965 | Not Available | Negative | 5606352 - 5606984 | 22771.8 |
| protoheme ix farnesyltransferase | AO275_18970 | Not Available | Negative | 5606981 - 5607880 | 33018.7 |
| cytochrome b | AO275_18975 | Not Available | Negative | 5607877 - 5608929 | 37408.6 |
| hypothetical protein | AO275_18980 | Not Available | Negative | 5608942 - 5609526 | 21750.7 |
| cytochrome oxidase biogenesis protein surf1,facilitates heme a insertion | AO275_18985 | Not Available | Negative | 5609492 - 5610241 | 28229.0 |
| mfs transporter | AO275_18990 | Not Available | Positive | 5610316 - 5610510 | 6916.84 |
| mfs transporter | AO275_18995 | Not Available | Negative | 5610581 - 5611471 | 33776.4 |
| cysteine synthase | AO275_19000 | Not Available | Negative | 5611473 - 5612051 | 21630.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
