Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar motor protein mota | AO275_08585 | Not Available | Positive | 5482326 - 5483012 | 24564.7 |
| biopolymer transporter exbd | AO275_08590 | Not Available | Positive | 5483014 - 5483418 | 14250.1 |
| ligand-gated channel | AO275_08595 | Not Available | Positive | 5483489 - 5485789 | 83229.2 |
| general secretion pathway protein gspi | AO275_08600 | Not Available | Positive | 5485815 - 5486204 | 14074.1 |
| general secretion pathway protein gspk | AO275_08605 | Not Available | Positive | 5486201 - 5486932 | 26670.4 |
| d-amino acid oxidase | AO275_08610 | Not Available | Positive | 5487350 - 5488675 | 46988.1 |
| hypothetical protein | AO275_08615 | Not Available | Negative | 5488757 - 5490052 | 46402.2 |
| lysine transporter lyse | AO275_08620 | Not Available | Negative | 5490335 - 5490976 | 22428.9 |
| branched-chain amino acid transporter | AO275_08625 | Not Available | Negative | 5491012 - 5491332 | 11308.6 |
| branched-chain amino acid abc transporter permease | AO275_08630 | Not Available | Negative | 5491322 - 5492041 | 25706.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
