Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | AO275_08230 | Not Available | Positive | 5372047 - 5373612 | 57019.5 |
| hypothetical protein | AO275_08235 | Not Available | Positive | 5373685 - 5374209 | 18676.3 |
| alkylhydroperoxidase | AO275_08240 | Not Available | Positive | 5374206 - 5374805 | 22081.2 |
| dihydroxyacetone kinase | AO275_08245 | Not Available | Negative | 5374876 - 5375520 | 22412.8 |
| dihydroxyacetone kinase | AO275_08250 | Not Available | Negative | 5375524 - 5376525 | 35188.5 |
| iditol 2-dehydrogenase | AO275_08255 | Not Available | Negative | 5376566 - 5377681 | 41067.8 |
| short-chain dehydrogenase | AO275_08260 | Not Available | Negative | 5377709 - 5378464 | 26328.7 |
| sugar abc transporter substrate-binding protein | AO275_08265 | Not Available | Negative | 5378696 - 5379706 | 36062.1 |
| sugar abc transporter permease | AO275_08270 | Not Available | Negative | 5379759 - 5380736 | 34085.7 |
| d-ribose transporter atp-binding protein | AO275_08275 | Not Available | Negative | 5380733 - 5382220 | 53605.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
