Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lycopene cyclase | AO275_08180 | Not Available | Positive | 5361198 - 5362364 | 44328.2 |
| phytoene dehydrogenase | AO275_08185 | Not Available | Positive | 5362361 - 5363851 | 54584.1 |
| phytoene synthase | AO275_08190 | Not Available | Positive | 5363848 - 5364801 | 35341.1 |
| beta-carotene hydroxylase | AO275_08195 | Not Available | Negative | 5364731 - 5365267 | 19900.1 |
| lysr family transcriptional regulator | AO275_08200 | Not Available | Positive | 5365473 - 5366423 | 34147.8 |
| fad-dependent oxidoreductase | AO275_08205 | Not Available | Positive | 5366637 - 5368097 | 53162.1 |
| abc transporter permease | AO275_08210 | Not Available | Positive | 5368094 - 5369068 | 35968.6 |
| peptide abc transporter permease | AO275_08215 | Not Available | Positive | 5369065 - 5369985 | 33084.5 |
| methionine abc transporter atp-binding protein | AO275_08220 | Not Available | Positive | 5369982 - 5370986 | 36064.6 |
| peptide abc transporter atp-binding protein | AO275_08225 | Not Available | Positive | 5370976 - 5371989 | 37048.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
