Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iclr family transcriptional regulator | AO275_08030 | Not Available | Positive | 5323440 - 5324222 | 29086.7 |
| amino acid deaminase | AO275_08035 | Not Available | Positive | 5324247 - 5325452 | 43454.4 |
| ketodeoxygluconokinase | AO275_08040 | Not Available | Positive | 5325482 - 5326402 | 33431.0 |
| dna helicase uvrd | AO275_08045 | Not Available | Positive | 5326531 - 5329029 | 93917.5 |
| hypothetical protein | AO275_08050 | Not Available | Negative | 5329055 - 5329327 | 9811.92 |
| spermidine/putrescine abc transporter substrate-binding protein | AO275_08055 | Not Available | Positive | 5329672 - 5330742 | 39044.8 |
| sulfonate abc transporter atp-binding protein | AO275_08060 | Not Available | Negative | 5330764 - 5331477 | 26172.9 |
| abc transporter permease | AO275_08065 | Not Available | Negative | 5331481 - 5332326 | 30169.6 |
| sulfonate abc transporter substrate-binding protein | AO275_08070 | Not Available | Negative | 5332323 - 5333333 | 36719.9 |
| hypothetical protein | AO275_08075 | Not Available | Positive | 5333818 - 5334504 | 25090.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
