Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| general secretion pathway protein gspm | AO275_06895 | Not Available | Positive | 5069327 - 5069896 | 21123.5 |
| type ii secretion system protein gspd | AO275_06900 | Not Available | Positive | 5069893 - 5072250 | 82391.9 |
| type ii secretion system protein gspe | AO275_06905 | Not Available | Positive | 5072247 - 5073665 | 51360.9 |
| type ii secretion system protein gspf | AO275_06910 | Not Available | Positive | 5073665 - 5074876 | 43700.7 |
| pectate lyase | AO275_06915 | Not Available | Negative | 5074937 - 5076076 | 40558.1 |
| histidine kinase | AO275_06920 | Not Available | Negative | 5076704 - 5078020 | 47674.4 |
| hypothetical protein | AO275_06925 | Not Available | Positive | 5078169 - 5078648 | 18872.9 |
| arac family transcriptional regulator | AO275_06930 | Not Available | Positive | 5078737 - 5079720 | 36620.1 |
| mfs transporter | AO275_06935 | Not Available | Negative | 5079786 - 5081207 | 50898.7 |
| gnat family acetyltransferase | AO275_06940 | Not Available | Negative | 5081357 - 5081875 | 19161.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
