Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor rf-3 | AO275_17325 | Not Available | Negative | 394580 - 395587 | 37497.8 |
| dna base-flipping protein ybaz | AO275_17330 | Not Available | Positive | 395748 - 396104 | 12661.1 |
| ampg family muropeptide mfs transporter | AO275_17335 | Not Available | Positive | 396159 - 397709 | 56301.4 |
| hypothetical protein | AO275_17340 | Not Available | Positive | 397791 - 398063 | 9457.02 |
| mechanosensitive ion channel protein mscs | AO275_17345 | Not Available | Negative | 398129 - 398959 | 29722.6 |
| nucleotide-binding protein | AO275_17350 | Not Available | Negative | 399079 - 399558 | 17965.8 |
| 2-dehydropantoate 2-reductase | AO275_17355 | Not Available | Positive | 399730 - 400650 | 33122.7 |
| histidine kinase | AO275_17360 | Not Available | Positive | 400695 - 402731 | 75726.9 |
| cobalamin adenosyltransferase | AO275_17365 | Not Available | Positive | 402746 - 403330 | 20942.2 |
| hypothetical protein | AO275_17370 | Not Available | Negative | 403442 - 404389 | 34190.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
