Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family transcriptional regulator | AO275_12670 | Not Available | Positive | 5005175 - 5005609 | 16241.8 |
| peptigoglycan-binding protein lysm | AO275_12675 | Not Available | Positive | 5005705 - 5007873 | 76604.1 |
| dehydrogenase | AO275_12680 | Not Available | Negative | 5007989 - 5008399 | 15845.6 |
| acyl-coa dehydrogenase | AO275_12685 | Not Available | Negative | 5008496 - 5010943 | 89150.4 |
| glutathione s-transferase | AO275_12690 | Not Available | Positive | 5011106 - 5011729 | 23406.9 |
| abc transporter | AO275_12695 | Not Available | Positive | 5011889 - 5012821 | 34354.6 |
| hypothetical protein | AO275_12700 | Not Available | Positive | 5012818 - 5013606 | 29034.6 |
| competence protein comec | AO275_12705 | Not Available | Positive | 5013742 - 5015958 | 80514.6 |
| biopolymer transporter exbb | AO275_12710 | Not Available | Positive | 5016030 - 5016707 | 24259.1 |
| biopolymer transporter exbd | AO275_12715 | Not Available | Positive | 5016704 - 5017135 | 15686.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
