Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartyl beta-hydroxylase | AO275_12370 | Not Available | Positive | 4933920 - 4934858 | 35700.1 |
| isocitrate dehydrogenase | AO275_12375 | Not Available | Positive | 4934924 - 4936642 | 65699.6 |
| histidine kinase | AO275_12380 | Not Available | Negative | 4936745 - 4940218 | 127266.0 |
| glycerol acyltransferase | AO275_12385 | Not Available | Positive | 4940441 - 4942315 | 68963.4 |
| sodium transporter | AO275_12390 | Not Available | Negative | 4942461 - 4943426 | 34443.5 |
| recombination-associated protein rdgc | AO275_12395 | Not Available | Negative | 4943510 - 4944430 | 34256.3 |
| Trna-val | Not Available | Not Available | Positive | 4944602 - 4944677 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 4944699 - 4944775 | Not Available |
| hypothetical protein | AO275_12410 | Not Available | Negative | 4944952 - 4945758 | 30459.5 |
| hypothetical protein | AO275_12415 | Not Available | Positive | 4946215 - 4946610 | 13800.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
