Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate synthase | AO275_12170 | Not Available | Positive | 4895224 - 4896102 | 31218.8 |
| hypothetical protein | AO275_12175 | Not Available | Positive | 4896121 - 4897239 | 40515.3 |
| mbl fold metallo-hydrolase | AO275_12180 | Not Available | Positive | 4897240 - 4897998 | 27721.1 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | AO275_12185 | Not Available | Positive | 4898027 - 4898737 | 26966.5 |
| Trna-ser | Not Available | Not Available | Positive | 4898830 - 4898919 | Not Available |
| hypothetical protein | AO275_12195 | Not Available | Negative | 4898977 - 4899348 | 13923.7 |
| hypothetical protein | AO275_12200 | Not Available | Negative | 4899854 - 4900063 | 7705.09 |
| hypothetical protein | AO275_12205 | Not Available | Positive | 4900346 - 4900642 | 10863.3 |
| antitoxin | AO275_12210 | Not Available | Positive | 4900645 - 4901046 | 14744.9 |
| sugar abc transporter permease | AO275_12215 | Not Available | Negative | 4901054 - 4902190 | 40026.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
