Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan-binding protein | AO275_12070 | Not Available | Positive | 4871777 - 4872274 | 17693.8 |
| hypothetical protein | AO275_12075 | Not Available | Positive | 4872281 - 4873096 | 28802.8 |
| 7-carboxy-7-deazaguanine synthase | AO275_12080 | Not Available | Positive | 4873268 - 4873915 | 24209.9 |
| 7-cyano-7-deazaguanine synthase | AO275_12085 | Not Available | Positive | 4873932 - 4874606 | 23657.1 |
| Trna-lys | Not Available | Not Available | Positive | 4874670 - 4874745 | Not Available |
| lysr family transcriptional regulator | AO275_12095 | Not Available | Negative | 4874882 - 4875778 | 33315.0 |
| short-chain dehydrogenase | AO275_12100 | Not Available | Positive | 4875914 - 4876660 | 26469.7 |
| hypothetical protein | AO275_12105 | Not Available | Positive | 4876660 - 4876842 | 6630.13 |
| diguanylate cyclase | AO275_12110 | Not Available | Negative | 4876992 - 4877948 | 34876.3 |
| chemotaxis protein chey | AO275_12115 | Not Available | Negative | 4877950 - 4881981 | 147878.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
