Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-(hydroxymethyl)glutathione dehydrogenase | AO275_11820 | Not Available | Positive | 4822325 - 4823437 | 39293.7 |
| s-formylglutathione hydrolase | AO275_11825 | Not Available | Positive | 4823497 - 4824345 | 31396.1 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | AO275_11830 | Not Available | Positive | 4824450 - 4824923 | 16799.3 |
| pseudouridine synthase | AO275_11835 | Not Available | Positive | 4824920 - 4825978 | 38894.3 |
| stationary phase survival protein sure | AO275_11840 | Not Available | Positive | 4825966 - 4826715 | 26631.6 |
| protein-l-isoaspartate o-methyltransferase | AO275_11845 | Not Available | Positive | 4826715 - 4827392 | 25091.6 |
| peptigoglycan-binding protein lysm | AO275_11850 | Not Available | Positive | 4827598 - 4828464 | 30467.4 |
| rna polymerase sigma factor rpos | AO275_11855 | Not Available | Positive | 4828567 - 4829577 | 38203.6 |
| ferredoxin | AO275_11860 | Not Available | Negative | 4830111 - 4830434 | 12035.2 |
| dna mismatch repair protein muts | AO275_11865 | Not Available | Negative | 4830680 - 4833259 | 95537.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
