Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| farnesyl-diphosphate synthase | AO275_11720 | Not Available | Positive | 4798214 - 4798969 | 28149.6 |
| phosphatidate cytidylyltransferase | AO275_11725 | Not Available | Positive | 4798969 - 4799784 | 29094.5 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | AO275_11730 | Not Available | Positive | 4799781 - 4800971 | 42394.5 |
| zinc metallopeptidase rsep | AO275_11735 | Not Available | Positive | 4801078 - 4802430 | 48391.1 |
| outer membrane protein assembly factor bama | AO275_11740 | Not Available | Positive | 4802505 - 4804877 | 86960.9 |
| hypothetical protein | AO275_11745 | Not Available | Positive | 4804923 - 4805426 | 18900.1 |
| udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase | AO275_11750 | Not Available | Positive | 4805428 - 4806483 | 36620.0 |
| 3-hydroxyacyl-acp dehydratase | AO275_11755 | Not Available | Positive | 4806593 - 4807033 | 16663.5 |
| udp-n-acetylglucosamine acyltransferase | AO275_11760 | Not Available | Positive | 4807030 - 4807806 | 27926.4 |
| lipid-a-disaccharide synthase | AO275_11765 | Not Available | Positive | 4807809 - 4808951 | 41751.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
