Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna threonylcarbamoyladenosine biosynthesis protein tsab | AO275_11565 | Not Available | Positive | 4764905 - 4765579 | 23935.0 |
| hypothetical protein | AO275_11570 | Not Available | Positive | 4765779 - 4766090 | 11299.2 |
| hypothetical protein | AO275_11575 | Not Available | Positive | 4766093 - 4766956 | 32700.3 |
| 2-methylisocitrate lyase | AO275_11580 | Not Available | Positive | 4767005 - 4767838 | 29046.5 |
| extensin | AO275_11585 | Not Available | Positive | 4767841 - 4768530 | 25408.5 |
| energy transducer tonb | AO275_11590 | Not Available | Negative | 4768531 - 4769151 | 22806.9 |
| sam-dependent methyltransferase | AO275_11595 | Not Available | Positive | 4769248 - 4770042 | 28588.6 |
| tetr family transcriptional regulator | AO275_11600 | Not Available | Negative | 4770061 - 4770699 | 23405.2 |
| rnd transporter | AO275_11605 | Not Available | Positive | 4770791 - 4771891 | 40058.9 |
| multidrug transporter acrb | AO275_11610 | Not Available | Positive | 4771897 - 4774965 | 113066.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
