Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter | AO275_11365 | Not Available | Negative | 4718149 - 4719393 | 46341.3 |
| cytochrome c assembly protein | AO275_11370 | Not Available | Negative | 4719406 - 4720218 | 29670.5 |
| rna-binding protein | AO275_11375 | Not Available | Positive | 4720432 - 4721808 | 49376.8 |
| 30s ribosomal protein s16 | AO275_11380 | Not Available | Positive | 4722056 - 4722313 | 9550.39 |
| 16s rrna processing protein rimm | AO275_11385 | Not Available | Positive | 4722319 - 4722858 | 20066.0 |
| trna (guanine-n1)-methyltransferase | AO275_11390 | Not Available | Positive | 4722864 - 4723616 | 28049.2 |
| 50s ribosomal protein l19 | AO275_11395 | Not Available | Positive | 4723661 - 4724011 | 12969.9 |
| recombinase xerd | AO275_11400 | Not Available | Positive | 4724113 - 4725009 | 33788.8 |
| protein-disulfide isomerase | AO275_11405 | Not Available | Positive | 4725156 - 4725896 | 26401.0 |
| homoserine dehydrogenase | AO275_11410 | Not Available | Positive | 4726035 - 4727339 | 46254.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
