Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AO275_11055 | Not Available | Negative | 4657241 - 4657603 | 13551.1 |
| hypothetical protein | AO275_11065 | Not Available | Negative | 4658232 - 4658642 | 15215.9 |
| hypothetical protein | AO275_11070 | Not Available | Negative | 4658727 - 4659242 | 18725.5 |
| Trna-leu | Not Available | Not Available | Positive | 4659412 - 4659496 | Not Available |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | AO275_11080 | Not Available | Positive | 4659614 - 4660678 | 38733.2 |
| queuine trna-ribosyltransferase | AO275_11085 | Not Available | Positive | 4660693 - 4661808 | 41037.8 |
| preprotein translocase subunit yajc | AO275_11090 | Not Available | Positive | 4661864 - 4662199 | 11826.5 |
| preprotein translocase subunit secd | AO275_11095 | Not Available | Positive | 4662262 - 4664130 | 67443.5 |
| preprotein translocase subunit secf | AO275_11100 | Not Available | Positive | 4664140 - 4665051 | 33060.6 |
| hypothetical protein | AO275_11105 | Not Available | Positive | 4665162 - 4665701 | 18637.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
