Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine-phosphate pyrophosphorylase | AO275_05335 | Not Available | Negative | 4635822 - 4636451 | 22490.2 |
| hydrogenase | AO275_05340 | Not Available | Negative | 4636475 - 4637272 | 28363.1 |
| histidine kinase | AO275_05345 | Not Available | Positive | 4637630 - 4639624 | 74301.6 |
| acyl-coa dehydrogenase | AO275_05350 | Not Available | Positive | 4639742 - 4641391 | 59790.5 |
| amp nucleosidase | AO275_05355 | Not Available | Positive | 4641444 - 4642907 | 54676.6 |
| pseudouridine synthase | AO275_05360 | Not Available | Positive | 4642975 - 4643607 | 23814.7 |
| asnc family transcriptional regulator | AO275_05365 | Not Available | Negative | 4643630 - 4644109 | 18178.1 |
| hypothetical protein | AO275_05370 | Not Available | Negative | 4644239 - 4644481 | 8908.99 |
| hypothetical protein | AO275_05375 | Not Available | Negative | 4644590 - 4644922 | 12220.7 |
| hypothetical protein | AO275_05380 | Not Available | Positive | 4644950 - 4645663 | 27041.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
