Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtpase rsga | AO275_04885 | Not Available | Negative | 4529631 - 4530662 | 37409.8 |
| oligoribonuclease | AO275_04890 | Not Available | Positive | 4530771 - 4531304 | 20507.4 |
| hypothetical protein | AO275_04895 | Not Available | Positive | 4531417 - 4532028 | 22182.1 |
| epoxyqueuosine reductase | AO275_04900 | Not Available | Negative | 4532247 - 4533326 | 40351.1 |
| carbohydrate kinase | AO275_04905 | Not Available | Positive | 4533390 - 4534880 | 51103.8 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | AO275_04910 | Not Available | Positive | 4534868 - 4535338 | 16951.3 |
| n-acetylmuramoyl-l-alanine amidase | AO275_04915 | Not Available | Positive | 4535353 - 4536777 | 50490.4 |
| dna mismatch repair protein | AO275_04920 | Not Available | Positive | 4536828 - 4538738 | 70135.7 |
| trna dimethylallyltransferase | AO275_04925 | Not Available | Positive | 4538739 - 4539710 | 35630.9 |
| rna-binding protein | AO275_04930 | Not Available | Positive | 4539802 - 4540062 | 9354.31 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
