Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-ketoadipyl coa thiolase | AO275_16970 | Not Available | Negative | 310658 - 311860 | 41738.4 |
| 3-oxoadipate--succinyl-coa transferase | AO275_16975 | Not Available | Negative | 311860 - 312639 | 27148.4 |
| 3-oxoadipate--succinyl-coa transferase | AO275_16980 | Not Available | Negative | 312639 - 313496 | 31109.3 |
| iclr family transcriptional regulator | AO275_16985 | Not Available | Negative | 313653 - 314495 | 30875.2 |
| beta-ketoadipyl coa thiolase | AO275_16990 | Not Available | Positive | 315340 - 315537 | 7886.24 |
| nuclease pin | AO275_16995 | Not Available | Positive | 315741 - 317213 | 52620.8 |
| atp-binding protein | AO275_17000 | Not Available | Negative | 317265 - 318752 | 53592.4 |
| glycoside hydrolase | AO275_17005 | Not Available | Positive | 318968 - 320065 | 40116.7 |
| deacetylase | AO275_17010 | Not Available | Positive | 320058 - 320843 | 30387.1 |
| formyltetrahydrofolate deformylase | AO275_17015 | Not Available | Negative | 321216 - 322067 | 32562.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
