Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AO275_02660 | Not Available | Positive | 4175915 - 4176352 | 16197.5 |
| hypothetical protein | AO275_02665 | Not Available | Positive | 4176349 - 4176756 | 15213.5 |
| peroxiredoxin | AO275_02670 | Not Available | Negative | 4176938 - 4177405 | 16968.5 |
| arsenate reductase | AO275_02675 | Not Available | Positive | 4177537 - 4177890 | 12878.7 |
| nad(p)h-quinone oxidoreductase | AO275_02680 | Not Available | Positive | 4177887 - 4178492 | 21229.6 |
| hypothetical protein | AO275_02685 | Not Available | Positive | 4178485 - 4178901 | 15480.5 |
| 3-methyladenine dna glycosylase | AO275_02690 | Not Available | Positive | 4178940 - 4179611 | 25429.6 |
| trna 2-thiocytidine biosynthesis protein ttca | AO275_02695 | Not Available | Negative | 4179618 - 4180442 | 31042.6 |
| hypothetical protein | AO275_02700 | Not Available | Positive | 4180679 - 4181278 | 21787.0 |
| zn-dependent metalloprotease | AO275_02705 | Not Available | Positive | 4181400 - 4181894 | 19330.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
