Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfonate abc transporter substrate-binding protein | AO275_02110 | Not Available | Negative | 4060158 - 4061117 | 34113.6 |
| lysr family transcriptional regulator | AO275_02115 | Not Available | Negative | 4061231 - 4062151 | 34195.1 |
| mechanosensitive ion channel protein mscs | AO275_02120 | Not Available | Positive | 4062267 - 4063694 | 50992.2 |
| arac family transcriptional regulator | AO275_02125 | Not Available | Positive | 4063855 - 4064292 | 16266.2 |
| transcriptional regulator | AO275_02130 | Not Available | Positive | 4064356 - 4067127 | 103229.0 |
| hypothetical protein | AO275_02135 | Not Available | Negative | 4067107 - 4068543 | 52935.2 |
| arac family transcriptional regulator | AO275_02140 | Not Available | Negative | 4068740 - 4069690 | 34912.4 |
| quercetin 2,3-dioxygenase | AO275_02145 | Not Available | Positive | 4070028 - 4070750 | 26365.9 |
| cupin | AO275_02150 | Not Available | Positive | 4070964 - 4071389 | 15423.2 |
| Trna-gly | Not Available | Not Available | Positive | 4071451 - 4071526 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
